The start and stop codons GS-4997 concentration ATG and TGA were boxed. Characteristics of DhAHP and selleckchem related genes The deduced D. hansenii Ahp amino acid sequence was compared with those of related proteins from the EMBL database using the EMBOSS alignment program. The analysis showed that the protein has 72.7% similarity to C. albicans alkyl hydroperoxide reductase (Gene ID: 3637850 AHP11). Thus, the
isolated gene is homologous to the Ahp gene of C. albicans and is therefore named DhAHP. The DhAhp sequence was also compared with a number of previously identified Ahp and peroxiredoxin homologs from different organisms using the protein sequence alignment program CLUSTAL W. Multiple sequence alignment analysis showed that DhAhp has 58% similarity to AHP11 (Swiss-Prot: Q5AF44) of C. albicans, 37% to peroxiredoxin of Pisum sativum (Swiss-Prot: B3GV28), 34% to peroxiredoxin of P. tremula (Swiss-Prot: Q8S3L0), 33% to PMP20 of Schizosaccharomyces pombe (Swiss-Prot: O14313), 30% to AHP1 of S. cerevisiae (Swiss-Prot: P38013), Pexidartinib clinical trial and 25% to Homo sapiens peroxiredoxin 5 (Swiss-Prot: P30044) (Fig. 3A). Furthermore, Cys-54, which is conserved in all related Prxs, is identified as the peroxidative cysteine in
DhAhp. Figure 3 A. Multiple alignment of related sequences to Dh Ahp. The alignment was performed using the software of CLUSTAL W program http://www.ebi.ac.uk/Tools/clustalw2/index.html. Asterisks indicate identical amino acids and periods show conserved amino acid substitutions. Percent of overall identity similarity (in parentheses): 1. DhAhp; 2. AHP1 of S. cerevisiae (Swiss-Prot: P38013) (30%); 3. PMP20 of S. pombe (Swiss-Prot: O14313) (33%); 4. AHP11 of C. albicans
(Swiss-Prot: Q5AF44) (58%); 5. peroxiredoxin of P. tremula (Swiss-Prot: Q8S3L0) (34%); 6. peroxiredoxin of P. sativum (Swiss-Prot: B3GV28) (37%); 7. peroxiredoxin of H. sapiens (Swiss-Prot: P30044) (25%). Cys54, conserved in all Prxs, is identified as the peroxidative cysteine. B. The phylogenetic relationship between Dh Ahp and peroxiredoxin from other organisms. Phylogenetic analysis revealed that the DhAhp protein is more homologous to yeast Ahps than to other Ahps from plants or peroxiredoxins buy Fludarabine from mammals. The DhAhp is located in the same subgroup as Ahps from yeasts, such as C. albicans and S. cerevisiae. Taken together, these results suggest that the Ahp of D. hansenii is more closely related to those of yeasts than to the plant Ahps or mammalian peroxiredoxins. It is conceivable that its function or enzymatic characteristics may be close to those of yeast Ahps (Fig. 3B). Genome organization and expression of DhAHP Southern blot analysis showed a single DNA fragment with homology to DhAHP (Fig. 4A) suggesting that it exists as a single copy in the genome of D. hansenii. Northern blot analysis revealed that expression of DhAHP is modulated by salt.